Once a dam has been constructed in a river, the natural flow of water will be disrupted.
You correctly state that initially there will be a period required for the dam to fill. Until then, little of no water will flow beyond the dam.
Dams are created for one or more of three reasons:
- To supply potable water to a population of humans for domestic or industrial purposes.
- For agricultural purposes.
- To generate hydro-electricity.
Water released from a dam prior to it being full may be to restore some flow for environmental reasons, because hydro electricity may need to be generated or it may be needed for agricultural reasons.
To protect dams from overfilling and damaging the dam wall spillways are generally constructed to allow the excess water to flow beyond the dam. For dams without a spillway, the dam gates will be opened to reduce the amount of water in the dam to protect the dam from failure.
One of the issues with dams is they prevent sediment carried by the river to travel the full length of the river. This can be detrimental to the natural replenishment of some farmlands of nutrient rich sediment and it is detrimental to the replenishment of nutrients to fish breeding regions near the mouths of rivers. This happened when the Egyptians built the Asswan Dam.
The other issue with dams is that people downstream of the dam cannot rely of the natural flow of the river, in terms of timing of flows and quantities of flow. This is the main concern for Egypt. It relies heavy on the Nile River as its main source of fresh water for hydro-electricity generation, agriculture and water for people to drink.